Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912218.1_cds_XP_016462251.1_55498
CDS Infomation

[gene=LOC107785453] [db_xref=GeneID:107785453] [protein=E3 UFM1-protein ligase 1 homolog] [partial=3'] [protein_id=XP_016462251.1] [location=complement(join(<7..78,177..266,359..427,513..578,3373..3527,3624..4047,4186..4242,4503..4596,6498..6601,6684..6749,8304..8351,8458..8724,8808..9119,9940..10113))] [gbkey=CDS]
Sequence

ATGGATGAAGAATTACTAGAATTACAAAGACAGTTCGAATTCGCACAACAAGCAAAATCC
ACCGTACGATTATCAGAACGAAACGTTGTGGAATTAGTGCAGAAACTTCATCAGCTTCAA
ATCATTGACTTTGACCTCCTCCATACTATCACCGGCAAAGAATACATTACACCTGAGCAA
TTGAGAAATGAAATTGTGGCTGAGATCAACAAACTAGGACGTATTTCCTTGATCGATTTA
GCTGACTCAACGGGTGTTGACTTGTACCATGTGGAGAAACAAGCCCAGCATGTAGTTTCC
CATGACTCATCCCTCATGTTAATTAATGGTGAAATTATCTCGAATACTTATTGGGATACA
GCAGCTGAAGAAATCAATGAAAGACTTCAAGAATGTAGCCAAATTGCCATCGCTGAAATA
GCAGGGCAATTACAAGTTGGGTCCGAATTAGTAGTCTCTATTCTTGAACCTCGTCTTGGG
ACTTTGGTAAAAGGTAGGCTTGAAGGTGGGCAATTGTATACACCAGCCTATGTTGCTCGT
GTAAATGCAATGGTTCGTGGTGCAGCTAGGGGTATTTTTGTTCCAATGAACACGTCAGCG
TTATGGAACACCTTGCAGAGTTTACTGCAAGAGATGGATGGAGCTGTTGGTGTTGCTGTA
GACGCTTCATTTTTCCAGTCATTATTTAATGGCTTAGTCAAAGAAGGCGAGATTCTCGGC
TCTCTCCGTGCAGGAGTTCATTGGACACCTTCTGTTTTTGCCATGGCTCAAAAGGACTGT
GTCGATTCCTTCTTTTCGCAGAATTCTTTTATTACTTATGATGCTATGCAAAAACTTGGG
ATTCCGCAACCTTCTCAATTCCTGCAGTCCAGATATCCAGATGGTATATCTCTGGATACT
GCATATGCTCACCCTTCAATGATTGAGATGTTGGATGCCGCTGTTGAGGATGCCATAGAA
CGTAATAGCTGGATTGATTCGCTTTCAGTTTTACCCGCTTCCTTAGGTAGCCAAGATGCA
TTTAAAATTCTGTCACTATGTCCATCGGTTCAAGCAGCACAAAAGTCGAATAGAGCACTT
ATCTTGGGAGATTCATATATTTTTAGCAATGGGTTTGTCAAGGATCTGTTTGATCGGATA
GAAAAGGAGATGGAAACATTAAGCATTCCTGGGCTTGCCGGTGCTGGGCCTGTAGATGAG
TTTCGTGTTGCTAAAGATGCTAAAGTTGGATATGACTCCAGTGAAGTAAATGAAACAAGC
AGTGATGCCGGTATGAGCAAACAGGCCTCGGAGAAAGGATCTAAGAAGAAAAAAGGAAAA
TCATCTGGCAATTCTAAGATGGCGCAAGCTGAAACAGGGGCAGATAACCAGGAATCTGTC
CCTAGTAAATCTAAGAAAGGTCAGAAGAAAGGTAAGGTGTCATCTGGATCACAAGCAGCA
GACTCAAAGTCAGGTGCTAGAAAGGATGAGGATAGCCTTGGCGCTATTTCAGAAGAATGG
GTAATTCAGAAGATTACATCTCTCAATCCTGACTTTGAAGAACAAGGACTGGATGATCCA
GAGATGATTCTTTTGCCTTTAGCAAGACATTTGAGACCTTTGCTCGTCAATTCATTGAAG
GAAAGAAGAAAGGCTGCCTTCACCGAAAATGCCCAGAAAATGAAAAAGCTACTTGATAAT
TTGCAGAAGAAACTTGATGAGTCATTTTTAAACATGCAGCTTTATGAAAAAGCCCTTGAT
TTGTTTGAAGATGACCCAACAACTTCGGTTCTTCTACACAAACATCTATTGCGAACCACA
GGAACCTCAATGATTGATACACTATTGCTTAACCTGGATATGCACAATAAACTGAAAAAT
GGAGTTCCAGTTGACCCTCAAAATCTCGAGTCCATTTCACTTAGCCCTGGAGATAGAAGT
GCTCTGGCTAAGAGTCTGCCACGTGTACTGTCAGCCAAGGCCATTGCAACAGTTGAAGCT
TTAGAAGGGAAGGTCAGT

Peptide Sequence

PEP ID

XP_016462251.1
PEP Infomation

PREDICTED: E3 UFM1-protein ligase 1 homolog, partial [Nicotiana tabacum]
Sequence

MDEELLELQRQFEFAQQAKSTVRLSERNVVELVQKLHQLQIIDFDLLHTITGKEYITPEQ
LRNEIVAEINKLGRISLIDLADSTGVDLYHVEKQAQHVVSHDSSLMLINGEIISNTYWDT
AAEEINERLQECSQIAIAEIAGQLQVGSELVVSILEPRLGTLVKGRLEGGQLYTPAYVAR
VNAMVRGAARGIFVPMNTSALWNTLQSLLQEMDGAVGVAVDASFFQSLFNGLVKEGEILG
SLRAGVHWTPSVFAMAQKDCVDSFFSQNSFITYDAMQKLGIPQPSQFLQSRYPDGISLDT
AYAHPSMIEMLDAAVEDAIERNSWIDSLSVLPASLGSQDAFKILSLCPSVQAAQKSNRAL
ILGDSYIFSNGFVKDLFDRIEKEMETLSIPGLAGAGPVDEFRVAKDAKVGYDSSEVNETS
SDAGMSKQASEKGSKKKKGKSSGNSKMAQAETGADNQESVPSKSKKGQKKGKVSSGSQAA
DSKSGARKDEDSLGAISEEWVIQKITSLNPDFEEQGLDDPEMILLPLARHLRPLLVNSLK
ERRKAAFTENAQKMKKLLDNLQKKLDESFLNMQLYEKALDLFEDDPTTSVLLHKHLLRTT
GTSMIDTLLLNLDMHNKLKNGVPVDPQNLESISLSPGDRSALAKSLPRVLSAKAIATVEA
LEGKVS

Transcript Sequence

Gene sequence data has not been registered.